Structure of PDB 5gt3 Chain D

Receptor sequence
>5gt3D (length=95) Species: 9606 (Homo sapiens) [Search protein sequence]
RTRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRL
AHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
3D structure
PDB5gt3 Structural analyses of the nucleosome complexes with human testis-specific histone variants, hTh2a and hTh2b
ChainD
Resolution2.91 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D T32 R33 I54 S55 S56 R86 S87 T88 T2 R3 I24 S25 S26 R56 S57 T58
BS02 dna D R31 K34 E35 S36 Y40 R1 K4 E5 S6 Y10
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0003677 DNA binding
GO:0030527 structural constituent of chromatin
GO:0042393 histone binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006325 chromatin organization
GO:0006334 nucleosome assembly
GO:0006337 nucleosome disassembly
GO:0006954 inflammatory response
GO:0031639 plasminogen activation
GO:0035092 sperm DNA condensation
GO:0051276 chromosome organization
GO:0071674 mononuclear cell migration
Cellular Component
GO:0000781 chromosome, telomeric region
GO:0000786 nucleosome
GO:0001674 female germ cell nucleus
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0009986 cell surface

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Molecular Function
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Cellular Component
External links
PDB RCSB:5gt3, PDBe:5gt3, PDBj:5gt3
PDBsum5gt3
PubMed27992841
UniProtQ96A08|H2B1A_HUMAN Histone H2B type 1-A (Gene Name=H2BC1)

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