Structure of PDB 5gap Chain D

Receptor sequence
>5gapD (length=140) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
ASVLLPQLRTGWHVDQAIVTETKRLVVIRFGRKNDRQCMIMDELLSSIAE
RVRNFAVIYLCDIDEVSDFDEMYELTDPMTVMFFYHNKHMMCDFGTGNNN
KLNFIVDDKQEMIDILETIFRGARKNKGLVVSPYDYNHKR
3D structure
PDB5gap Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 angstrom resolution.
ChainD
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D G96 G98 N100 K126 N127 K128 G129 N138 R141 G95 G97 N99 K125 N126 K127 G128 N137 R140
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005682 U5 snRNP
GO:0046540 U4/U6 x U5 tri-snRNP complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:5gap, PDBe:5gap, PDBj:5gap
PDBsum5gap
PubMed26829225
UniProtQ06819|DIB1_YEAST Spliceosomal protein DIB1 (Gene Name=DIB1)

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