Structure of PDB 5g0a Chain D

Receptor sequence
>5g0aD (length=473) Species: 1404 (Priestia megaterium) [Search protein sequence]
SLTVQKINWEQVKEWDRKYLMRTFSTQNEYQPVPIESTEGDYLIMPDGTR
LLDFFNQLYCVNLGQKNQKVNAAIKEALDRYGFVWDTYATDYKAKAAKII
IEDILGDEDWPGKVRFVSTGSEAVETALNIARLYTNRPLVVTREHDYHGW
TGGAATVTRLRSYRSGLVGENSESFSAQIPGSSYNSAVLMAPSPNMFQDS
DGNLLKDENGELLSVKYTRRMIENYGPEQVAAVITEVSQGAGSAMPPYEY
IPQIRKMTKELGVLWINDEVLTGFGRTGKWFGYQHYGVQPDIITMGKGLS
SSSLPAGAVLVSKEIAAFMDKHRWESVSTYAGHPVAMAAVCANLEVMMEE
NFVEQAKDSGEYIRSKLELLQEKHKSIGNFDGYGLLWIVDIVNAKTKTPY
VKLDRNFTHGMNPNQIPTQIIMKKALEKGVLIGGVMPNTMRIGASLNVSR
GDIDKAMDALDYALDYLESGEWQ
3D structure
PDB5g0a Structural Basis of Substrate Range and Enantioselectivity of Two S-Selective Omega- Transaminases
ChainD
Resolution1.7 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLP D G121 S122 Y148 H149 E237 D269 V271 L272 K298 G120 S121 Y147 H148 E236 D268 V270 L271 K297
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Feb 19 07:40:59 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5g0a', asym_id = 'D', title = 'Structural Basis of Substrate Range and Enantioselectivity of Two S-Selective Omega- Transaminases'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5g0a', asym_id='D', title='Structural Basis of Substrate Range and Enantioselectivity of Two S-Selective Omega- Transaminases')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0008483,0030170', uniprot = '', pdbid = '5g0a', asym_id = 'D'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008483,0030170', uniprot='', pdbid='5g0a', asym_id='D')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>