Structure of PDB 5fvc Chain D

Receptor sequence
>5fvcD (length=369) Species: 162145 (human metapneumovirus) [Search protein sequence]
SLQGIHLSDLSYKHAILKESQYTIKRDVGTTTAVTPSSLQQEITLLCGEI
LYAKHADYKYAAEIGIQYISTALGSERVQQILRNSGSEVQVVLTRTYQML
DIHGVEKSWVEEIDKEARKTMATLLKESSGNIPQNQRPSAPDTPIILLCV
GALIFTKLASTIEVGLETTVRRANRVLSDALKRYPRMDIPKIARSFYDLF
EQKVYHRSLFIEYGKALGSSSTGSKAESLFVNIFMQAYGAGQTMLRWGVI
ARSSNNIMLGHVSVQAELKQVTEVYDLVREMGPESGLLHLRQSPKAGLLS
LANCPNFASVVLGNASGLGIIGMYRGRVPNTELFSAAESYAKSLKESNKI
NFSSLGLTDEEKEAAEHFL
3D structure
PDB5fvc Nucleocapsid assembly in pneumoviruses is regulated by conformational switching of the N protein.
ChainD
Resolution4.17 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D K171 S174 R185 R186 R189 V190 L243 N246 Q250 G255 T257 W261 S314 M337 Y338 R339 G340 K157 S160 R171 R172 R175 V176 L229 N232 Q236 G241 T243 W247 S300 M323 Y324 R325 G326
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5fvc, PDBe:5fvc, PDBj:5fvc
PDBsum5fvc
PubMed26880565
UniProtQ91F57

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