Structure of PDB 5f88 Chain D

Receptor sequence

>5f88D (length=214) Species: 10090 (Mus musculus) [Search protein sequence]

QVQLKQSGPGLVQPSQSLSITCTVSGFSLTNYGVHWVRQSPGKGLEWLGV
IWSGGNTDYNTPFTSRLSINKDNSKSQVFFKMNSLQSNDTAIYYCARALT
YYDYEFAYWGQGTLVTVSAASTKGPSVFPLAPSGTAALGCLVKDYFPEPV
TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNH
KPSNTKVDKRVEPK

3D structure

PDB

5f88 Natural and non-natural amino-acid side-chain substitutions: affinity and diffraction studies of meditope-Fab complexes.

Chain

Resolution

2.481 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	D	Q39 S40 P41 T90 Q111 L114 E154 P173	Q39 S40 P41 T90 Q111 L114 E148 P167

External links

PDB	RCSB:5f88, PDBe:5f88, PDBj:5f88
PDBsum	5f88
PubMed	27834791

[Back to BioLiP]