Structure of PDB 5e8o Chain D

Receptor sequence
>5e8oD (length=274) Species: 10090 (Mus musculus) [Search protein sequence]
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAP
WMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSG
CDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQS
GAAEHYKAYLEGECVEWLHRYLKNGNALRTDSPKAHVTHHPRSKGEVTLR
CWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLG
KEQNYTCRVYHEGLPEPLTLRWEP
3D structure
PDB5e8o The MHC Class I Cancer-Associated Neoepitope Trh4 Linked with Impaired Peptide Processing Induces a Unique Noncanonical TCR Conformer.
ChainD
Resolution1.98 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D Y7 E63 K66 Q70 W73 S77 N80 Y84 L95 F116 Y123 W147 H155 Y156 Y159 W167 Y171 Y7 E63 K66 Q70 W73 S77 N80 Y84 L95 F116 Y123 W147 H155 Y156 Y159 W167 Y171
External links
PDB RCSB:5e8o, PDBe:5e8o, PDBj:5e8o
PDBsum5e8o
PubMed26800871
UniProtP01899|HA11_MOUSE H-2 class I histocompatibility antigen, D-B alpha chain (Gene Name=H2-D1)

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