Structure of PDB 5dny Chain D

Receptor sequence
>5dnyD (length=358) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence]
MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALF
GAGSNFNYDTIITKGKKSVYVELDFEVNGNNYKIIREYDSGRGGAKLYKN
GKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLE
TVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYNLEKEKEKLTKF
VEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTK
DFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDE
PTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGN
VSKVKING
3D structure
PDB5dny ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex.
ChainD
Resolution3.11 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D A52 N57 Y58 I108 S109 K144 A52 N57 Y58 I108 S109 K144
BS02 dna D S54 N55 R92 R123 S54 N55 R92 R123
BS03 AGS D Y890 L910 N914 S916 E919 Y243 L263 N267 S269 E272
BS04 AGS D K14 G35 G37 K38 S39 S40 I62 T63 Q134 E947 K14 G35 G37 K38 S39 S40 I62 T63 Q134 E300
Gene Ontology
Molecular Function
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006302 double-strand break repair

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Molecular Function
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Biological Process
External links
PDB RCSB:5dny, PDBe:5dny, PDBj:5dny
PDBsum5dny
PubMed26717941
UniProtQ58718|RAD50_METJA DNA double-strand break repair Rad50 ATPase (Gene Name=rad50)

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