Structure of PDB 5dhm Chain D

Receptor sequence

>5dhmD (length=266) Species: 431947 (Porphyromonas gingivalis ATCC 33277) [Search protein sequence]

RNQGSAAERLITNLYLLLFDQSGANPAKYYIASGGIWLPDDMKVKLDMTQ
SEAGERKVYVVANVDNAVKTALDAVANESDLQTVKRTTAMPWSTDIASPF
LMSGNKTHDFLANRLLDNVPLVRAIAKVELNISLSEKFQIVPIIVNGSLS
EFKFRYVNFDKETYVVKPTTKPDNLISSANGVWPQITDWTVWGASLNTSP
APDAGTGYTLDANGKVTALRIVTYLNERDSKGATVEVALPRGPELYRLPL
PDKILRNHWYKYEVEI

3D structure

PDB

5dhm Structure of the fimbrial protein Mfa4 from Porphyromonas gingivalis in its precursor form: implications for a donor-strand complementation mechanism.

Chain

Resolution

1.9 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	D	R53 N54 Q55 E60 W93 M98 K99 V100 L102 M104 T105 Q106 F166 R170 L171 L172 N174 V175 P176 L177 R179 Y313 R314 N324 H325 W326 K328 Y329 E330 V331 E332	R1 N2 Q3 E8 W37 M42 K43 V44 L46 M48 T49 Q50 F110 R114 L115 L116 N118 V119 P120 L121 R123 Y246 R247 N257 H258 W259 K261 Y262 E263 V264 E265

Gene Ontology

	Cellular Component
GO:0009279	cell outer membrane
GO:0009289	pilus

View graph for
Cellular Component

External links

PDB	RCSB:5dhm, PDBe:5dhm, PDBj:5dhm
PDBsum	5dhm
PubMed	26972441
UniProt	B2RHG4\|MFA4_PORG3 Minor fimbrium tip subunit MfA4 (Gene Name=PGN_0290)

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