Structure of PDB 5d57 Chain D

Receptor sequence
>5d57D (length=108) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
AGYSWKGLRAAWINEAAFRQEGVAVLLCVVIAAWLDVDAVTRVLLISSVM
LVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWA
ILLWSHFG
3D structure
PDB5d57 In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures.
ChainD
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.1.107: diacylglycerol kinase (ATP).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 78M D L102 I105 L89 I92
BS02 78M D A46 R55 I59 A33 R42 I46
BS03 78M D L21 W25 I26 M63 L8 W12 I13 M50
BS04 78M D W47 L48 F120 W34 L35 F107
BS05 78M D R32 Q33 V36 R19 Q20 V23
Gene Ontology
Molecular Function
GO:0004143 ATP-dependent diacylglycerol kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0006654 phosphatidic acid biosynthetic process
GO:0008610 lipid biosynthetic process
GO:0008654 phospholipid biosynthetic process
GO:0009411 response to UV
GO:0016310 phosphorylation
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5d57, PDBe:5d57, PDBj:5d57
PDBsum5d57
PubMed26894538
UniProtP0ABN1|KDGL_ECOLI Diacylglycerol kinase (Gene Name=dgkA)

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