Structure of PDB 5cid Chain D

Receptor sequence

>5cidD (length=108) Species: 559292 (Saccharomyces cerevisiae S288C)

TEFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEG
YSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLI
TYLKKACE

3D structure

• PDB: 5cid Constraints on the Radical Cation Center of Cytochrome c Peroxidase for Electron Transfer from Cytochrome c.
• Chain: D
• Resolution: 2.763 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	HEC	D	R13 C14 C17 H18 K27 V28 G29 P30 R38 Y48 N52 W59 M64 L68 T78 K79 M80 L94	R18 C19 C22 H23 K32 V33 G34 P35 R43 Y53 N57 W64 M69 L73 T83 K84 M85 L99

Gene Ontology

Molecular Function

• GO:0005515 protein binding
• GO:0009055 electron transfer activity
• GO:0020037 heme binding
• GO:0046872 metal ion binding
• GO:1901612 cardiolipin binding

Biological Process

• GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
• GO:0006123 mitochondrial electron transport, cytochrome c to oxygen

Cellular Component

• GO:0005739 mitochondrion
• GO:0005758 mitochondrial intermembrane space

External links

• PDB: RCSB:5cid, PDBe:5cid, PDBj:5cid
• PDBsum: 5cid
• PubMed: 27499202
• UniProt: P00044|CYC1_YEAST Cytochrome c isoform 1 (Gene Name=CYC1)