Structure of PDB 5c8e Chain D

Receptor sequence
>5c8eD (length=205) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]
QEVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLR
EVGEAWHRGEIGVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGE
RHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGAGAVVLSAVL
SEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALW
LPRGP
3D structure
PDB5c8e Structural basis for gene regulation by a B12-dependent photoreceptor.
ChainD
Resolution3.89 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 B12 D L121 L124 G128 E141 G174 R176 H177 E178 G180 S222 L225 G247 G248 Q249 M264 L267 L46 L49 G53 E66 G99 R101 H102 E103 G105 S147 L150 G172 G173 Q174 M189 L192
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003700 DNA-binding transcription factor activity
GO:0031419 cobalamin binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0006355 regulation of DNA-templated transcription

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5c8e, PDBe:5c8e, PDBj:5c8e
PDBsum5c8e
PubMed26416754
UniProtQ746J7

[Back to BioLiP]