Structure of PDB 5byg Chain D

Receptor sequence
>5bygD (length=180) Species: 648242 (Adeno-associated virus 2 Srivastava/1982) [Search protein sequence]
MPGFYEIVIKPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEAL
FFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPT
LPNWFAVTKTRNGAGGGNKVVDESYIPNFLLPKTQPELQWAWTNMEQYLS
ACLNLTERKRLVAQHLTHVSQTQEQNKENQ
3D structure
PDB5byg Structural Insights into the Assembly of the Adeno-associated Virus Type 2 Rep68 Protein on the Integration Site AAVS1.
ChainD
Resolution2.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D K101 M103 V104 R107 Q111 R138 N139 A141 K74 M76 V77 R80 Q84 R111 N112 A114
BS02 dna D S102 M103 G106 K136 G142 G143 G144 N145 S75 M76 G79 K109 G115 G116 G117 N118
External links
PDB RCSB:5byg, PDBe:5byg, PDBj:5byg
PDBsum5byg
PubMed26370092
UniProtQ89268|REP78_AAV2S Protein Rep78 (Gene Name=Rep78)

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