Structure of PDB 5ahs Chain D

Receptor sequence
>5ahsD (length=390) Species: 1247726 (Advenella mimigardefordensis DPN7) [Search protein sequence]
ELTPEQRTLQTQARELAQSVFASTAVQTDLTEQYPWDNVAQLRDAGFMGM
MLPTSVGGRGLSTLDTVIVIEEMAKACATMGRITVDSNLGAIGAITKYGS
EEQIKLAADLVLAGDKPAICISEPNAGSAASEMTTRADKNGDHYILNGEK
YWITGGGVSKLHLIFARVFDDGVEQGIGAFITVLDDHGPEGLKVGRRLYA
MGVRGIPETHLEFHDLKIHKSMMITFPDGLKRGFAALMSAYNAQRVGAGA
VALGIAQCAFEEGVAYLKRREQFGRPLAEFQGLQWMVADMSVQLEAARLM
LRSAAVSGETFPDINKAAQAKIFAAETANKVTNDALQFFGSSGYGRHNPM
ERHVRDARMFTIAGGTAQILRTQVASKILDMKLPQTRDGY
3D structure
PDB5ahs 3-Sulfinopropionyl-Coenzyme a (3Sp-Coa) Desulfinase from Advenella Mimigardefordensis Dpn7(T): Crystal Structure and Function of a Desulfinase with an Acyl-Coa Dehydrogenase Fold.
ChainD
Resolution2.3 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) I123 S124 Q246 G366 S378
Catalytic site (residue number reindexed from 1) I121 S122 Q244 G364 S376
Enzyme Commision number 3.13.1.4: 3-sulfinopropanoyl-CoA desulfinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD D I123 S124 G129 S130 W154 T156 E210 M361 A365 T368 Q370 I371 Q387 I121 S122 G127 S128 W152 T154 E208 M359 A363 T366 Q368 I369 Q385
BS02 COA D S130 A237 M240 S241 Y243 N244 R247 I316 G366 I371 S128 A235 M238 S239 Y241 N242 R245 I314 G364 I369
Gene Ontology
Molecular Function
GO:0003995 acyl-CoA dehydrogenase activity
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
GO:0016787 hydrolase activity
GO:0050660 flavin adenine dinucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:5ahs, PDBe:5ahs, PDBj:5ahs
PDBsum5ahs
PubMed26057676
UniProtK4L7X3|SPCAD_ADVMD 3-sulfinopropanoyl-CoA desulfinase (Gene Name=acd)

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