Structure of PDB 4ymd Chain D

Receptor sequence
>4ymdD (length=155) Species: 9606 (Homo sapiens) [Search protein sequence]
SQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYAD
AQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFV
YSDHSPMRTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCE
FDKEN
3D structure
PDB4ymd Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome.
ChainD
Resolution2.87 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MAN D E232 N234 E240 N252 D253 E117 N119 E125 N137 D138
BS02 MAN D R200 E244 R85 E129
BS03 CA D D207 E211 N235 E240 D241 D92 E96 N120 E125 D126
BS04 CA D E232 N234 E240 N252 D253 E117 N119 E125 N137 D138
BS05 CA D E211 D241 E96 D126
External links
PDB RCSB:4ymd, PDBe:4ymd, PDBj:4ymd
PDBsum4ymd
PubMed25912189
UniProtQ9BWP8|COL11_HUMAN Collectin-11 (Gene Name=COLEC11)

[Back to BioLiP]