Structure of PDB 4wce Chain D

Receptor sequence
>4wceD (length=166) Species: 93061 (Staphylococcus aureus subsp. aureus NCTC 8325) [Search protein sequence]
KEKFNTEVTENLMKKFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAV
EELELITGQKPLVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFLDKLI
SVSLPRVRDFQGVSKKAFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDI
VIVTTANTDEEARELL
3D structure
PDB4wce Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
ChainD
Resolution3.526 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D N37 G39 P65 V67 T68 F114 Q115 D123 Y143 N33 G35 P61 V63 T64 F110 Q111 D119 Y139
BS02 rna D S24 M26 E27 T61 Q63 S20 M22 E23 T57 Q59
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4wce, PDBe:4wce, PDBj:4wce
PDBsum4wce
PubMed26464510
UniProtQ2FW18|RL5_STAA8 Large ribosomal subunit protein uL5 (Gene Name=rplE)

[Back to BioLiP]