Structure of PDB 4v59 Chain D

Receptor sequence

>4v59D (length=1467) Species: 5541 (Thermomyces lanuginosus)

MRPEVEQELAYTLLVELLAYQFAMPVRWIETQDVILAEKRTERIVEIGPS
DTLGGMARRTLQSKYEAYDAATSVQRQILCYCKDAKEIYYDVEPIDALTK
DQRALFKQQLEIIARYLKMDLRAGDKAFVASQESQKALQAQLDLWQAEHG
DIYAAGIEPAFDPLKARVYDSSWNWARQDALSMYYDIIFGRLRVVDREIV
SQCIQIMNRSNPLLLEFMQYHIDHCPTERGETYQLAKELGQQLIENCKEV
LGKPPVYKDVSIPTGPQTTIDARGNIQYQEVPRASARKFEHYVKQMAEGG
PISQYSNRTKVQNDLRSVYKLIRRQHRLSKSSQLQFNALYKDVIRALAMN
ESQIMQRPGKVETIPFLHLRKKDEFGNWEYSKKLTGIYLDGLEAAARSGL
TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGI
YARCGARGSQLVVVPFNQGSKQDVEALVNYIYDTKNGLGWDLDYVVPFAA
IPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVI
LPLSPNHGTFGNDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTR
GTGLMSANNLVAEGVEKLGVRTFSQQEMAFNLLGLMAPAIVNLCQSDPVF
ADLNGGLQFIPDLKGLMTKLRKEIMETSAIRQAVIKETAIENKVVNGEDH
EALYRRVITEPRANLKYPFPELPDWDKDIKPLNDQLRGMVNLDKVVVVTG
LAEIGPWGNARTRWEMEAYGKFSLEGCVEMAWMMGLIKNHNGPLKGKPYS
GWVDAKTGEPVDDKDVKAKYEKYILEHSGIRLIEPELFGGYDPNRKQLLQ
EVVIEQDLEPFEASKEQAEEFKREHGDKVEIFEIPETGQYTVRLRKGATL
LIPKALQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSVAEAL
LSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKD
ILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGK
ARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTR
NGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQ
GVLTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVA
AIKSQRSEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRDS
RIAPLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRT
KGNAVLGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGNRNADNVDKV
MEQFDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQAIGVHPKYLFATLDK
AQYEAYCVKVQARQKKAYRFFHNGLINNKLFVAKDKAPYEDRIQSKVFLN
PQSRVTQESNGELKFPA

3D structure

• PDB: 4v59 Structure of Fungal Fatty Acid Synthase and Implications for Iterative Substrate Shuttling
• Chain: D
• Resolution: 3.1 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	NAP	D	G659 I665 T684 S685 R686 N715 Q716 F746 A748 P800 Y814 K818 I844 L852	G411 I417 T436 S437 R438 N467 Q468 F498 A500 P552 Y566 K570 I596 L604

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Nov 27 14:53:25 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4v59', asym_id = 'D', title = 'Structure of Fungal Fatty Acid Synthase and Implications for Iterative Substrate Shuttling'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4v59', asym_id='D', title='Structure of Fungal Fatty Acid Synthase and Implications for Iterative Substrate Shuttling')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0000287,0004312,0004315,0004316,0005835,0006633,0008897,0016746,0042759', uniprot = '', pdbid = '4v59', asym_id = 'D'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000287,0004312,0004315,0004316,0005835,0006633,0008897,0016746,0042759', uniprot='', pdbid='4v59', asym_id='D')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>