Structure of PDB 4rdi Chain D

Receptor sequence
>4rdiD (length=239) Species: 562 (Escherichia coli) [Search protein sequence]
VVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALART
GIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV
TVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTT
GGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVD
CVFSTEALGFGAATMVTATFGFVAVSHALKKMMAKAARQ
3D structure
PDB4rdi The Structure of Escherichia coli TcdA (Also Known As CsdL) Reveals a Novel Topology and Provides Insight into the tRNA Binding Surface Required for N(6)-Threonylcarbamoyladenosine Dehydratase Activity.
ChainD
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP D G37 G40 D61 R72 Q73 K85 F108 V109 I129 D130 P134 G35 G38 D59 R70 Q71 K83 F106 V107 I127 D128 P132
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008641 ubiquitin-like modifier activating enzyme activity
GO:0016874 ligase activity
GO:0030955 potassium ion binding
GO:0031402 sodium ion binding
GO:0042803 protein homodimerization activity
GO:0061503 tRNA threonylcarbamoyladenosine dehydratase
Biological Process
GO:0061504 cyclic threonylcarbamoyladenosine biosynthetic process
Cellular Component
GO:0016020 membrane

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Cellular Component
External links
PDB RCSB:4rdi, PDBe:4rdi, PDBj:4rdi
PDBsum4rdi
PubMed26101842
UniProtQ46927|TCDA_ECOLI tRNA threonylcarbamoyladenosine dehydratase (Gene Name=tcdA)

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