Structure of PDB 4pot Chain D

Receptor sequence
>4potD (length=270) Species: 943908 (Human polyomavirus 9) [Search protein sequence]
VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDN
PNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLH
QGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVT
IKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGA
TTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQN
WRGLPRYFNVTLRKRVVKNP
3D structure
PDB4pot Crystallographic and glycan microarray analysis of human polyomavirus 9 VP1 identifies N-glycolyl neuraminic acid as a receptor candidate.
ChainD
Resolution2.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL D S77 K78 S45 K46
BS02 NGC D L65 Y68 D71 G134 H274 N276 Y277 N282 L33 Y36 D39 G102 H242 N244 Y245 N250
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:4pot, PDBe:4pot, PDBj:4pot
PDBsum4pot
PubMed24648448
UniProtE9NQ90

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