Structure of PDB 4pd4 Chain D

Receptor sequence
>4pd4D (length=248) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVA
WRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPN
EQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGVALPPG
SNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEP
EHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPKPRK
3D structure
PDB4pd4 Structural analysis of atovaquone-inhibited cytochrome bc1 complex reveals the molecular basis of antimalarial drug action.
ChainD
Resolution3.04 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 7.1.1.8: quinol--cytochrome-c reductase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 HEM D C101 C104 H105 N169 P174 P175 R184 Y190 L195 F218 M225 V228 V251 C40 C43 H44 N108 P113 P114 R123 Y129 L134 F157 M164 V167 V190
Gene Ontology
Molecular Function
GO:0009055 electron transfer activity
GO:0020037 heme binding

View graph for
Molecular Function
External links
PDB RCSB:4pd4, PDBe:4pd4, PDBj:4pd4
PDBsum4pd4
PubMed24893593
UniProtP07143|CY1_YEAST Cytochrome c1, heme protein, mitochondrial (Gene Name=CYT1)

[Back to BioLiP]