Structure of PDB 4oxd Chain D

Receptor sequence
>4oxdD (length=171) Species: 171101 (Streptococcus pneumoniae R6) [Search protein sequence]
HMEVVNKGDYYSIQGKYDEIIVANKHYPLSKDYNPGENPTAKAELVKLIK
AMQEAGFPISDHYSGFRSYETQTKLYQDSARPGYSEHQTGLAFDVIGTDG
DLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAEEWHLRYVGKEAK
EIAESGLSLEEYYGFEGGDYV
3D structure
PDB4oxd Structure of the LdcB LD-carboxypeptidase reveals the molecular basis of peptidoglycan recognition.
ChainD
Resolution2.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN D H153 D160 H207 H87 D94 H141
BS02 ZN D H-2 E56 H1 E3
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4oxd, PDBe:4oxd, PDBj:4oxd
PDBsum4oxd
PubMed24909784
UniProtQ8DQQ1

[Back to BioLiP]