Structure of PDB 4odm Chain D

Receptor sequence
>4odmD (length=150) Species: 274 (Thermus thermophilus) [Search protein sequence]
MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEG
EAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNP
MPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHL
3D structure
PDB4odm Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD.
ChainD
Resolution1.75 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.2.1.8: peptidylprolyl isomerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D Q16 G19 Q16 G19
BS02 peptide D R34 N35 L36 I37 E60 Y63 G64 Q90 Y92 P102 L103 R34 N35 L36 I37 E60 Y63 G64 Q90 Y92 P102 L103
BS03 peptide D A78 F79 P80 Q90 F91 Y92 A78 F79 P80 Q90 F91 Y92
Gene Ontology
Molecular Function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity
GO:0046872 metal ion binding
Biological Process
GO:0042026 protein refolding

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Molecular Function
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Biological Process
External links
PDB RCSB:4odm, PDBe:4odm, PDBj:4odm
PDBsum4odm
PubMed27664121
UniProtQ5SLE7

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