Structure of PDB 4h5o Chain D

Receptor sequence
>4h5oD (length=244) Species: 11588 (Rift Valley fever virus) [Search protein sequence]
DNYQELAIQFAAQAVDRNEIEQWVREFAYQGFDARRVIELLKQYGGADWE
KDAKKMIVLALTRGNKPRRMMMKMSKEGKATVEALINKYKLKEGNPSRDE
LTLSRVAAALAGRTCQALVVLSEWLPVTGTTMDGLSPAYPRHMMHPSFAG
MVDPSLPGDYLRAILDAHSLYLLQFSRVINPNLRGRTKEEVAATFTQPMN
AAVNSNFISHEKRREFLKAFGLVDSNGKPSAAVMAAAQAYKTAA
3D structure
PDB4h5o Phleboviruses encapsidate their genomes by sequestering RNA bases.
ChainD
Resolution3.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D Y30 G32 F33 G65 N66 K67 R70 G95 N96 S105 R106 V179 I180 N181 T195 Q198 P199 A203 Y29 G31 F32 G64 N65 K66 R69 G94 N95 S104 R105 V178 I179 N180 T194 Q197 P198 A202
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0042802 identical protein binding
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019028 viral capsid
GO:0030430 host cell cytoplasm
GO:0042025 host cell nucleus
GO:0044172 host cell endoplasmic reticulum-Golgi intermediate compartment
GO:0044177 host cell Golgi apparatus
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:4h5o, PDBe:4h5o, PDBj:4h5o
PDBsum4h5o
PubMed23129612
UniProtD3K5I7|NCAP_RVFV Nucleoprotein (Gene Name=N)

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