Structure of PDB 4g0a Chain D

Receptor sequence
>4g0aD (length=312) Species: 36435 (Simian 11 rotavirus (serotype 3 / strain SA11-Ramig)) [Search protein sequence]
AELACFCYPHLENDSYKFIPFNNLAIKAMLTAKVDKKDMDKFYDSIIYGI
APPPQFKKRYNTNDNSRGMNFETIMFTKVAMLICEALNSLKVTQANVSNV
LSRVVSIRHLENLVIRKENPQDILFHSKDLLLKSTLIAIGQSKEIETTIT
AEGGEIVFQNAAFTMWKLTYLEHQLMPILDQNFIEYKVTLNEDKPISDVH
VKELVAELRWQYNKFAVITHGKGHYRIVKYSSVANHADRVYATFKSNVKT
GVNNDFNLLDQRIIWQNWYAFTSSMKQGNTLDVCKRLLFQKMKPEKNPFK
GLSTDRKMDEVS
3D structure
PDB4g0a Crystallographic Analysis of Rotavirus NSP2-RNA Complex Reveals Specific Recognition of 5' GG Sequence for RTPase Activity.
ChainD
Resolution2.0995 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D R104 V105 K223 R227 N236 D239 R240 A243 R103 V104 K222 R226 N235 D238 R239 A242
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003723 RNA binding
GO:0004550 nucleoside diphosphate kinase activity
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016817 hydrolase activity, acting on acid anhydrides
GO:0017111 ribonucleoside triphosphate phosphatase activity
GO:0046872 metal ion binding
Biological Process
GO:0019079 viral genome replication
Cellular Component
GO:0030430 host cell cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4g0a, PDBe:4g0a, PDBj:4g0a
PDBsum4g0a
PubMed22811529
UniProtQ03243|NSP2_ROTSR Non-structural protein 2

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