Structure of PDB 4dr9 Chain D

Receptor sequence
>4dr9D (length=184) Species: 269084 (Synechococcus elongatus PCC 6301) [Search protein sequence]
VAIRVAKKKLAKPPLDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTM
YSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQ
CQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMD
HLNGVLFVDRVENRLELNEALDKKGFAVQAVRPV
3D structure
PDB4dr9 Structure and function of a cyanophage-encoded peptide deformylase.
ChainD
Resolution1.9 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G61 Q66 C109 L110 H151 E152 H155
Catalytic site (residue number reindexed from 1) G57 Q62 C105 L106 H147 E148 H151
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN D C109 H151 H155 C105 H147 H151
BS02 BB2 D I60 G61 Q66 G108 C109 L110 Y116 H151 E152 H155 I56 G57 Q62 G104 C105 L106 Y112 H147 E148 H151 MOAD: ic50=10nM
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:4dr9, PDBe:4dr9, PDBj:4dr9
PDBsum4dr9
PubMed23407310
UniProtA0A0H3JZJ4

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