Structure of PDB 4cvn Chain D

Receptor sequence
>4cvnD (length=165) Species: 272844 (Pyrococcus abyssi GE5) [Search protein sequence]
MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGEVEIDELAYFV
ERNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAE
LVDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDW
SEVYDEIIPYLRLGG
3D structure
PDB4cvn RNA Mimicry by the Fap7 Adenylate Kinase in Ribosome Biogenesis
ChainD
Resolution2.121 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.4.3: adenylate kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP D G10 V11 G12 K13 T14 T15 R96 R100 K138 P140 G10 V11 G12 K13 T14 T15 R82 R86 K124 P126
Gene Ontology
Molecular Function
GO:0004017 adenylate kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006364 rRNA processing
GO:0016310 phosphorylation
GO:0042254 ribosome biogenesis
GO:0042274 ribosomal small subunit biogenesis
GO:0046940 nucleoside monophosphate phosphorylation

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Molecular Function
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Biological Process
External links
PDB RCSB:4cvn, PDBe:4cvn, PDBj:4cvn
PDBsum4cvn
PubMed24823650
UniProtQ9UZK4|KAD6_PYRAB Putative adenylate kinase (Gene Name=PYRAB11420)

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