Structure of PDB 4b2o Chain D

Receptor sequence
>4b2oD (length=264) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]
MRILFIGDVVGSPGRDMVKEYVPKLKTKYKPHFTIINGENAAHGKGLTEK
IYHSLIQSGADAITMGNHTWDKKEIFDFIDDVPNLVRPANFPEGTPGKGI
TYVKANGKELAVINLQGRTFLPPLDDPFLKADELIAEAAKRTPYIFIDFH
AEATSEKLALGWYTDGRASAVVGTHTHVQTADNRILPKGTAYITDVGMTG
PYDGILGMDRETIIKRFKTNLPVRFTVAEGKTTLSGVVIDIDDQTKKAVK
IERILINDDHMFFE
3D structure
PDB4b2o The Ymdb Phosphodiesterase is a Global Regulator of Late Adaptive Responses in Bacillus Subtilis.
ChainD
Resolution1.64 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.4.16: 2',3'-cyclic-nucleotide 2'-phosphodiesterase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PO4 D E39 N40 N67 H68 H175 H177 E39 N40 N67 H68 H175 H177
BS02 FE2 D E39 N67 H150 H175 E39 N67 H150 H175
BS03 FE2 D D8 E39 N40 H177 D8 E39 N40 H177
Gene Ontology
Molecular Function
GO:0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
GO:0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:4b2o, PDBe:4b2o, PDBj:4b2o
PDBsum4b2o
PubMed24163345
UniProtO31775|YMDB_BACSU 2',3'-cyclic-nucleotide 2'-phosphodiesterase (Gene Name=ymdB)

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