Structure of PDB 3x1l Chain D

Receptor sequence

>3x1lD (length=331) Species: 224325 (Archaeoglobus fulgidus DSM 4304) [Search protein sequence]

MFDMFEKAVVFGLYSITPVHAGSGAELSVIDLPIQRERHTGFPVIWGQSL
KGVLRSRFRQLELDEKIEVEQKWKWKEKTKEVLKEKADEFIKKVEERKRD
PLLTEIVFGPATDGASEHAGAVSVGDAKILLFPVRSAKGVFAFVTSPIVI
QRLKEDFELVSEIENDIELKKVELSNNETIAGNALILNGENKVILEDIVL
KVKSVIENLVEVLKTLFGDNFFGKIKERIAIVSDDVFKSFTRFSTEIVAR
VRIDAEKGTVARGGLWYEEFLPSDTLMYSLIAVGSPKKLPKEVDNTQKIV
NVLKVTFNNAFLQIGGDETVGKGFVKVRAGV

3D structure

PDB

3x1l Crystal structure of the CRISPR-Cas RNA silencing Cmr complex bound to a target analog.

Chain

Resolution

2.096 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	G22 G24 Q48 S49 K51 G52 V53 R55 P111 A112 T113 A116 H119 A120 G121 A263 R264 V265 R266 I267 G272 V274 W280 Q329 G331 G332 D333 T335	G22 G24 Q48 S49 K51 G52 V53 R55 P110 A111 T112 A115 H118 A119 G120 A249 R250 V251 R252 I253 G258 V260 W266 Q313 G315 G316 D317 T319
BS02	dna	D	D31 S117 R266 R276 G277 L279 W280	D31 S116 R252 R262 G263 L265 W266

Gene Ontology

	Biological Process
GO:0051607	defense response to virus

View graph for
Biological Process

External links

PDB	RCSB:3x1l, PDBe:3x1l, PDBj:3x1l
PDBsum	3x1l
PubMed	25921071
UniProt	O28416

[Back to BioLiP]