Structure of PDB 3wdm Chain D

Receptor sequence
>3wdmD (length=255) Species: 69014 (Thermococcus kodakarensis KOD1) [Search protein sequence]
VNIPKSHPRYWSLYYREKIIEGMEKGMTAKAGLIAHGRGEAFDYLIGERT
IEPAERAMRAAVAKFLLAEHPVISVNGNVAALVPKETIELAKALNAKLEI
NLFYRTEERVRTIAEELRKYDPEIEILGINPTKRIPGLEGKVDENGIWKA
DVVLVPLEDGDRTEALVRMGKFVVTVDLNPLSRSARMADITIVDNIVRAY
PRMVELAREMKDYSREELLKIVGEYDNGKTLSDVLLHIRDRLTRLAEEGI
WRRKE
3D structure
PDB3wdm Crystal structure of phosphopantothenate synthetase from Thermococcus kodakarensis
ChainD
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 6.3.2.36: 4-phosphopantoate--beta-alanine ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADN D A36 R39 L161 D181 L182 N183 N199 I200 A35 R38 L157 D177 L178 N179 N195 I196
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0016881 acid-amino acid ligase activity
Biological Process
GO:0015937 coenzyme A biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3wdm, PDBe:3wdm, PDBj:3wdm
PDBsum3wdm
PubMed24638914
UniProtQ5JIZ8|PPS_THEKO 4-phosphopantoate--beta-alanine ligase (Gene Name=TK1686)

[Back to BioLiP]