Structure of PDB 3vkj Chain D

Receptor sequence
>3vkjD (length=363) Species: 2286 (Saccharolobus shibatae) [Search protein sequence]
IVNRKVEHVEIAAFENVDGLSSSTFLNDVILVHQGFPGISFSEINTKTKF
FRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEK
AEARESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIA
VHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMET
AKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVP
TAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSA
IEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVILGKLKEWAEY
RGINLSIYEKVRK
3D structure
PDB3vkj Substrate-Induced Change in the Quaternary Structure of Type 2 Isopentenyl Diphosphate Isomerase from Sulfolobus shibatae.
ChainD
Resolution1.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.3.3.2: isopentenyl-diphosphate Delta-isomerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FNR D T65 G66 M67 S96 N125 H155 K193 S218 G222 T223 W225 R277 M295 A296 L297 T62 G63 M64 S93 N122 H152 K190 S215 G219 T220 W222 R274 M292 A293 L294
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004452 isopentenyl-diphosphate delta-isomerase activity
GO:0010181 FMN binding
GO:0016491 oxidoreductase activity
GO:0016853 isomerase activity
GO:0046872 metal ion binding
GO:0070402 NADPH binding
Biological Process
GO:0008299 isoprenoid biosynthetic process
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:3vkj, PDBe:3vkj, PDBj:3vkj
PDBsum3vkj
PubMed22505674
UniProtP61615|IDI2_SACSH Isopentenyl-diphosphate delta-isomerase (Gene Name=fni)

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