Structure of PDB 3ty9 Chain D

Receptor sequence
>3ty9D (length=374) Species: 203119 (Acetivibrio thermocellus ATCC 27405) [Search protein sequence]
SMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVV
CEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLE
AELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVG
ISGRVVLDEAVKLLKQASLNADINELLQRFTERSEMMQKYVEAYRKYCWP
VNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNH
ILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIRELLQPAVKCRGR
EYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNE
PLYRVHECVFGVLALESEPVDPRL
3D structure
PDB3ty9 The adenylyltransferase domain of bacterial Pnkp defines a unique RNA ligase family.
ChainD
Resolution3.12 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.5.1.3: RNA ligase (ATP).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP D E529 K531 H532 R536 E607 R687 F704 K792 E52 K54 H55 R59 E130 R195 F212 K296
BS02 MG D T731 D734 T239 D242
External links