Structure of PDB 3qkt Chain D

Receptor sequence
>3qktD (length=318) Species: 2261 (Pyrococcus furiosus) [Search protein sequence]
MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWP
LRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAM
KRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESD
EAREKVVREVLNEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKY
SEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAG
EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD
HVIRISLENGSSKVEVVS
3D structure
PDB3qkt ABC ATPase signature helices in Rad50 link nucleotide state to Mre11 interface for DNA repair.
ChainD
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ANP D K763 Y764 F791 S793 G795 E796 K199 Y200 F227 S229 G231 E232
BS02 ANP D R12 S13 N32 G33 S34 G35 K36 S37 S38 T62 K63 V64 Q140 R12 S13 N32 G33 S34 G35 K36 S37 S38 T62 K63 V64 Q140
BS03 MG D S37 Q140 S37 Q140
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006302 double-strand break repair

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Molecular Function
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Biological Process
External links
PDB RCSB:3qkt, PDBe:3qkt, PDBj:3qkt
PDBsum3qkt
PubMed21441914
UniProtP58301|RAD50_PYRFU DNA double-strand break repair Rad50 ATPase (Gene Name=rad50)

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