Structure of PDB 3mbh Chain D

Receptor sequence
>3mbhD (length=286) Species: 226186 (Bacteroides thetaiotaomicron VPI-5482) [Search protein sequence]
KVKKIAAVHDLSGMGRVSLTVVIPILSSMGFQVCPLPTAVLSNHTQYPGF
SFLDLTDEMPKIIAEWKKLEVQFDAIYTGYLGSPRQIQIVSDFIKDFRQP
DSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLD
EPYKADSTDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQG
NRYWKVTCPYLPAHYPGTGDTFTSVITGSLMQGDSLPMALDRATQFILQG
IRATFGYEYDNREGILLEKVLHNLDMPIQMASYELI
3D structure
PDB3mbh Crystal structure of a putative phosphomethylpyrimidine kinase (BT_4458) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.00 A resolution (orthorhombic form with pyridoxal)
ChainD
Resolution2.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.1.35: pyridoxal kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PXL D D14 L45 H48 T49 Q50 Y84 Y121 D224 D10 L41 H44 T45 Q46 Y80 Y117 D220
Gene Ontology
Molecular Function
GO:0008478 pyridoxal kinase activity
GO:0016301 kinase activity
GO:0046872 metal ion binding
Biological Process
GO:0009443 pyridoxal 5'-phosphate salvage
GO:0016310 phosphorylation
GO:0042816 vitamin B6 metabolic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3mbh, PDBe:3mbh, PDBj:3mbh
PDBsum3mbh
PubMed
UniProtQ89ZB9

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