Structure of PDB 3m1y Chain D

Receptor sequence
>3m1yD (length=206) Species: 210 (Helicobacter pylori) [Search protein sequence]
SLQKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNETDFHKSL
ILRVSKLKNMPLKLAKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFD
LATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQR
LLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLKQHATHCINEPDL
ALIKPL
3D structure
PDB3m1y Crystal Structure of a Phosphoserine phosphatase (SerB) from Helicobacter pylori
ChainD
Resolution2.4 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D8 F9 D10 G97 K141 D168
Catalytic site (residue number reindexed from 1) D9 F10 D11 G97 K141 D168
Enzyme Commision number 3.1.3.3: phosphoserine phosphatase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 MG D D8 D10 D164 D9 D11 D164
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0016787 hydrolase activity
GO:0036424 L-phosphoserine phosphatase activity
GO:0046872 metal ion binding
Biological Process
GO:0006564 L-serine biosynthetic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:3m1y, PDBe:3m1y, PDBj:3m1y
PDBsum3m1y
PubMed
UniProtO25367

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