Structure of PDB 3jaf Chain D

Receptor sequence
>3jafD (length=342) Species: 7955 (Danio rerio) [Search protein sequence]
APSEFLDKLMGKVSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDY
RVNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANF
HEVTTDNKLLRISKNGNVLYSIRITLVLACPMDLKNFPMDVQTCIMQLES
FGYTMNDLIFEWDEKGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFT
CIEARFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGIT
TVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFIA
RAGTKLFISRAKRIDTVSRVAFPLVFLIFNIFYWITYKLVPR
3D structure
PDB3jaf Glycine receptor mechanism elucidated by electron cryo-microscopy.
ChainD
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 IVM D I241 I245 P246 I217 I221 P222
BS02 IVM D S283 R287 A304 L307 S259 R263 A280 L283
Gene Ontology
Molecular Function
GO:0004888 transmembrane signaling receptor activity
GO:0005216 monoatomic ion channel activity
GO:0005230 extracellular ligand-gated monoatomic ion channel activity
GO:0016594 glycine binding
GO:0022824 transmitter-gated monoatomic ion channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0034220 monoatomic ion transmembrane transport
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Cellular Component
External links
PDB RCSB:3jaf, PDBe:3jaf, PDBj:3jaf
PDBsum3jaf
PubMed26344198
UniProtO93430|GLRA1_DANRE Glycine receptor subunit alphaZ1 (Gene Name=glra1)

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