Structure of PDB 3ijy Chain D

Receptor sequence

>3ijyD (length=220) Species: 10090 (Mus musculus) [Search protein sequence]

EVMLVESGGGLVQPGNSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGF
IRNKAKGYTTEYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCAR
DISPSYGVYYEGFAYWGQGTLVTVSAATTTAPSVYPLVPGSSVTLGCLVK
GYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTV
ICNVAHPASKTELIKRIEPR

3D structure

PDB

3ijy The role of CDR H3 in antibody recognition of a synthetic analog of a lipopolysaccharide antigen.

Chain

Resolution

2.85 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	KDO	D	Y33 R52 I96 E100E	Y33 R52 I102 E111

External links

PDB	RCSB:3ijy, PDBe:3ijy, PDBj:3ijy
PDBsum	3ijy
PubMed	19767317

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