Structure of PDB 3ijh Chain D

Receptor sequence

>3ijhD (length=221) Species: 10090 (Mus musculus) [Search protein sequence]

EVMLVESGGGLVQPGNSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGF
IRNKAKGYTTEYSASVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCAR
DISPSYGVYYEGFAYWGQGTLVTVSAATTTAPSVYPLVPGGSSVTLGCLV
KGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPSQT
VICNVAHPASKTELIKRIEPR

3D structure

PDB

3ijh The role of CDR H3 in antibody recognition of a synthetic analog of a lipopolysaccharide antigen.

Chain

Resolution

2.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	KO2	D	Y33 R52 K53 I96 P98 E100E	Y33 R52 K56 I102 P104 E111

External links

PDB	RCSB:3ijh, PDBe:3ijh, PDBj:3ijh
PDBsum	3ijh
PubMed	19767317

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