Structure of PDB 3i3y Chain D

Receptor sequence
>3i3yD (length=285) Species: 272620 (Klebsiella pneumoniae subsp. pneumoniae MGH 78578) [Search protein sequence]
LRVYVTGNITVDETWSIPDIPKKGASIHGVKVSQDIGGKGANQAIILSRC
GIETRLIAATGNDSNGAWIRQQIKNEPLMLLPDGHFNQHSDTSIILNSAD
GDNAIITTTAAADTFSLDEMIPHMADAVAGDILLQQGNFSLDKTRALFQY
ARSRGMTTVFNPSPVNPDFCHLWPLIDIAVVNESEAELLQPYGVKTLVIT
QGAAGAWLVQEGQRQFCPAVPAEALDTTGAGDTFLAVMLASALLRGVAPD
ALALAHASRAAAITVSRRGTLSAFPGSRELAALLT
3D structure
PDB3i3y Crystal structure of Ribokinase in Complex with D-Ribose from Klebsiella pneumoniae
ChainD
Resolution2.15 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G229 A230 G231 D232
Catalytic site (residue number reindexed from 1) G229 A230 G231 D232
Enzyme Commision number 2.7.1.15: ribokinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 RIB D D12 G37 G38 K39 N42 S93 D232 D12 G37 G38 K39 N42 S93 D232
Gene Ontology
Molecular Function
GO:0004747 ribokinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0046872 metal ion binding
Biological Process
GO:0006014 D-ribose metabolic process
GO:0016310 phosphorylation
GO:0019303 D-ribose catabolic process
GO:0046835 carbohydrate phosphorylation
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:3i3y, PDBe:3i3y, PDBj:3i3y
PDBsum3i3y
PubMed
UniProtA6T989

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