Structure of PDB 3dvo Chain D

Receptor sequence
>3dvoD (length=336) Species: 1911 (Streptomyces griseus) [Search protein sequence]
PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVI
PGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDI
FEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLP
RSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQND
EMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLY
QPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAE
GAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG
3D structure
PDB3dvo The structure of SgrAI bound to DNA; recognition of an 8 base pair target.
ChainD
Resolution1.892 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.21.4: type II site-specific deoxyribonuclease.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D R29 A95 K96 G99 R152 S153 K242 R243 S244 R246 R249 R28 A94 K95 G98 R151 S152 K241 R242 S243 R245 R248
BS02 dna D R31 T33 Q36 L37 Q39 Q40 N92 A93 K96 R246 S247 D248 R30 T32 Q35 L36 Q38 Q39 N91 A92 K95 R245 S246 D247
BS03 CA D D188 F241 D187 F240
BS04 CA D E103 N149 L150 E102 N148 L149
Gene Ontology
Molecular Function
GO:0042802 identical protein binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:3dvo, PDBe:3dvo, PDBj:3dvo
PDBsum3dvo
PubMed18701646
UniProtQ9F6L0

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