Structure of PDB 3dh7 Chain D

Receptor sequence
>3dh7D (length=313) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
KHLEACLEGEVAYQKTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLK
APFLIGAMTERINLALAEAAEALGVGMMLGSGRILLERPEAVRKVAPKAL
LIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRG
LVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSW
ARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGT
DGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRTALFAIGA
RNPKEARGRVERV
3D structure
PDB3dh7 Crystal structure of type 2 isopentenyl diphosphate isomerase from Thermus thermophilus in complex with inorganic pyrophosphate
ChainD
Resolution2.97 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.3.3.2: isopentenyl-diphosphate Delta-isomerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FMN D C14 A65 M66 T67 S95 N123 H152 K187 V189 T217 W219 G263 G264 Y266 A285 R286 C6 A57 M58 T59 S81 N104 H133 K168 V170 T198 W200 G244 G245 Y247 A266 R267
BS02 POP D S95 R97 L124 G125 Q128 H152 S81 R83 L105 G106 Q109 H133
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0004452 isopentenyl-diphosphate delta-isomerase activity
GO:0010181 FMN binding
GO:0016491 oxidoreductase activity
GO:0016853 isomerase activity
GO:0046872 metal ion binding
GO:0070402 NADPH binding
Biological Process
GO:0008299 isoprenoid biosynthetic process
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:3dh7, PDBe:3dh7, PDBj:3dh7
PDBsum3dh7
PubMed18693754
UniProtQ53W52

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