Structure of PDB 3d8a Chain D

Receptor sequence
>3d8aD (length=63) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
AFNQTEFNKLLLECVVKTQSSVAKILGIESLSPHVSGNSKFEYANMVEDI
REKVSSEMERFFP
3D structure
PDB3d8a Structural basis of specific TraD-TraM recognition during F plasmid-mediated bacterial conjugation.
ChainD
Resolution2.55 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D G86 Y102 V106 R110 G27 Y43 V47 R51
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:3d8a, PDBe:3d8a, PDBj:3d8a
PDBsum3d8a
PubMed18717787
UniProtP10026|TRAM1_ECOLI Relaxosome protein TraM (Gene Name=traM)

[Back to BioLiP]