Structure of PDB 2zxi Chain D

Receptor sequence
>2zxiD (length=603) Species: 63363 (Aquifex aeolicus) [Search protein sequence]
SHMAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSC
NPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRA
QADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYK
TKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRF
KTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWFPKGKEQVN
CWITYTTPKTHEIIRKNLHRYCPSIEDKIVKFPDKERHQIFLEPEGLDTI
EIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYP
TLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRR
DESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGREL
GLLSEEQYKLVKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMN
YTLDDVKEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDT
KIPPDIDYDKIPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVY
LGK
3D structure
PDB2zxi Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon
ChainD
Resolution2.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD D I13 G14 G15 G16 A18 V37 L38 C48 E125 V126 T155 T156 G157 F159 S181 T200 G201 Y348 I350 G376 N377 T382 G383 R434 I15 G16 G17 G18 A20 V39 L40 C50 E127 V128 T157 T158 G159 F161 S183 T202 G203 Y336 I338 G364 N365 T370 G371 R422
Gene Ontology
Molecular Function
GO:0050660 flavin adenine dinucleotide binding
Biological Process
GO:0002098 tRNA wobble uridine modification
GO:0008033 tRNA processing
GO:0030488 tRNA methylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2zxi, PDBe:2zxi, PDBj:2zxi
PDBsum2zxi
PubMed19446527
UniProtO66962|MNMG_AQUAE tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG (Gene Name=mnmG)

[Back to BioLiP]