Structure of PDB 2wyy Chain D

Receptor sequence
>2wyyD (length=414) Species: 11285 (Vesicular stomatitis Indiana virus strain San Juan) [Search protein sequence]
SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDL
RGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDT
IGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPE
YRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMF
FHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILN
REVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWG
QLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVG
DNKYTPTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLR
EKTIGKYAKSEFDK
3D structure
PDB2wyy Cryo-Em Model of the Bullet-Shaped Vesicular Stomatitis Virus.
ChainD
Resolution10.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D R143 M149 E151 K155 V219 D224 A226 S287 S290 S291 V292 R312 N315 R317 R408 R142 M148 E150 K154 V218 D223 A225 S286 S289 S290 V291 R311 N314 R316 R400
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0019083 viral transcription
GO:0039703 RNA replication
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2wyy, PDBe:2wyy, PDBj:2wyy
PDBsum2wyy
PubMed20133572
UniProtP03521|NCAP_VSIVA Nucleoprotein (Gene Name=N)

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