Structure of PDB 2oyq Chain D

Receptor sequence
>2oyqD (length=807) Species: 12353 (Escherichia phage RB69) [Search protein sequence]
KEFYLTVEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYFD
IYGKPCTRKLFANMRDASQWIKRMEDIGLEALGMDDFKLAYLSDTYNYEI
KYDHTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDL
LNSPYGNVEEWSIEIAAGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQ
QKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENM
YGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYD
GPISKLRESNHQRYISYNIIAVYRVLQIDAKRQFINLSLDMGYYAKIQIQ
SVFSPIKTWDAIIFNSLKEQNKVIPQGRSHPVQPYPGAFVKEPIPNRYKY
VMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYINAVAERPSDVYSC
SPNGMMYYKDRDGVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKEAPLDV
DYRFDDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQINRKLLINSLYG
ALGNVWFRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEAFVL
YGDTDSIYVSADKIIDKVGESKFRDTNHWVDFLDKFARERMEPAIDRGFR
EMCEYMNNKQHLMFMDREAIAGPPLGSKGIGGFWTGKKRYALNVWDMEGT
RYAEPKLKIMGLETQKSSTPKAVQKALKECIRRMLQEGEESLQEYFKEFE
KEFRQLNYISIASVDLIKDDVLHWMDYTVLLEKTFIKPLEGFTSAAKLDY
EKKASLF
3D structure
PDB2oyq Caught bending the a-rule: crystal structures of translesion DNA synthesis with a non-natural nucleotide.
ChainD
Resolution2.86 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
3.1.11.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D Q733 K734 S735 Q715 K716 S717
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0004527 exonuclease activity
GO:0008408 3'-5' exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0006261 DNA-templated DNA replication
GO:0039686 bidirectional double-stranded viral DNA replication
GO:0039693 viral DNA genome replication

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Molecular Function
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Biological Process
External links
PDB RCSB:2oyq, PDBe:2oyq, PDBj:2oyq
PDBsum2oyq
PubMed17718515
UniProtQ38087|DPOL_BPR69 DNA-directed DNA polymerase (Gene Name=43)

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