Structure of PDB 2nv9 Chain D

Receptor sequence
>2nv9D (length=363) Species: 10506 (Paramecium bursaria Chlorella virus 1) [Search protein sequence]
MNSVVNNILKAHTKSFYVSSPKIVEDLIDQWTILFPRVTPHYAVKCNNDE
VLLKTMCDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAK
DQGVDIATFDSSFELDKIHTYHPNCKMILRIRCDDPNAAVQLGNKFGANE
DEIRHLLEYAKQLDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAIS
VGHKPYILDIGGGLHADIDELTMSDYINDAIKDFFPEVTIVAEPGRFFAE
HYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVP
DDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTT
SFNGFGEYDVYYI
3D structure
PDB2nv9 X-ray Structure of Paramecium bursaria Chlorella Virus Arginine Decarboxylase: Insight into the Structural Basis for Substrate Specificity.
ChainD
Resolution1.95 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) K48 H176 E252
Catalytic site (residue number reindexed from 1) K45 H173 E243
Enzyme Commision number 4.1.1.19: arginine decarboxylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLP D K48 D67 H176 S179 G215 G216 E252 G254 R255 Y353 K45 D64 H173 S176 G212 G213 E243 G245 R246 Y344
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004586 ornithine decarboxylase activity
Biological Process
GO:0006596 polyamine biosynthetic process
GO:0033387 putrescine biosynthetic process from ornithine
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2nv9, PDBe:2nv9, PDBj:2nv9
PDBsum2nv9
PubMed17305368
UniProtQ84527

[Back to BioLiP]