Structure of PDB 2gic Chain D

Receptor sequence
>2gicD (length=416) Species: 11277 (Vesicular stomatitis Indiana virus) [Search protein sequence]
SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDL
RGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDT
IGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPE
YRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMF
FHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILN
REVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWG
QLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVG
DNKYTPDLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQG
LREKTIGKYAKSEFDK
3D structure
PDB2gic Structure of the vesicular stomatitis virus nucleoprotein-RNA complex unveils how the RNA is sequestered
ChainD
Resolution2.92 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D R143 R146 M149 K154 K155 R214 Y215 I218 V219 D224 A226 K286 S290 S291 R312 R317 R408 R142 R145 M148 K153 K154 R213 Y214 I217 V218 D223 A225 K285 S289 S290 R311 R316 R402
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0019083 viral transcription
GO:0039703 RNA replication
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2gic, PDBe:2gic, PDBj:2gic
PDBsum2gic
PubMed16778022
UniProtP03521|NCAP_VSIVA Nucleoprotein (Gene Name=N)

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