Structure of PDB 2cdp Chain D

Receptor sequence
>2cdpD (length=130) Species: 203122 (Saccharophagus degradans 2-40) [Search protein sequence]
ASIAVEAENFNAVGGTFPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGN
YTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSV
YLSAGTHQVRLHGAGSNNWQWNLDKFTLSN
3D structure
PDB2cdp Family 6 Carbohydrate Binding Modules in Beta-Agarases Display Exquisite Selectivity for the Non- Reducing Termini of Agarose Chains.
ChainD
Resolution1.59 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AAL D R118 H120 R110 H112
BS02 GAL D Y46 R118 Y38 R110
BS03 GAL D V69 W97 W127 V61 W89 W119
BS04 AAL D N39 Y40 W97 W127 N130 N31 Y32 W89 W119 N122
BS05 CA D E8 E10 T36 D132 E6 E8 T28 D124
BS06 CA D P26 Y40 N42 D45 P18 Y32 N34 D37
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding

View graph for
Molecular Function
External links
PDB RCSB:2cdp, PDBe:2cdp, PDBj:2cdp
PDBsum2cdp
PubMed16601125
UniProtQ6DN99

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