Structure of PDB 2cdo Chain D

Receptor sequence
>2cdoD (length=137) Species: 86304 (Saccharophagus degradans) [Search protein sequence]
TASMAVEAENFNAVGGTFSDGQAQPVSVYTVNGNTAINYVNQGDYADYTI
AVAQAGNYTISYQAGSGVTGGSIEFMVNENGSWASKTVTAVPNQGWDNFQ
PLNGGSVYLSAGTHQVRLHGAGSNNWQWNLDKFTLSN
3D structure
PDB2cdo Family 6 Carbohydrate Binding Modules in Beta-Agarases Display Exquisite Selectivity for the Non- Reducing Termini of Agarose Chains.
ChainD
Resolution1.64 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL D V69 W127 V68 W126
BS02 AAL D N39 Y40 W97 W127 N130 N38 Y39 W96 W126 N129
BS03 AAL D M77 R118 H120 M76 R117 H119
BS04 GAL D Y46 R118 Y45 R117
BS05 CA D E8 E10 T36 D132 E7 E9 T35 D131
BS06 CA D D21 P26 Y40 N42 D45 D20 P25 Y39 N41 D44
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding

View graph for
Molecular Function
External links
PDB RCSB:2cdo, PDBe:2cdo, PDBj:2cdo
PDBsum2cdo
PubMed16601125
UniProtQ6DN99

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