Structure of PDB 1y60 Chain D

Receptor sequence
>1y60D (length=169) Species: 272630 (Methylorubrum extorquens AM1) [Search protein sequence]
AKITKVQVGEALVGDGNEVAHIDLIIGPRGSPAETAFCNGLVNNKHGFTS
LLAVIAPNLPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQDAVAE
GIIPADEADDLYVLVGVFIHWEAADDAKIQKYNYEATKLSIQRAVNGEPK
ASVVTEQRKSATHPFAANA
3D structure
PDB1y60 How an enzyme binds the C1-carrier tetrahydromethanopterin: Structure of the tetrahydromethanopterin dependent formaldehyde-activating enzyme (Fae) from Methylobacterium extorquens AM1
ChainD
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.2.1.147: 5,6,7,8-tetrahydromethanopterin hydro-lyase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 H4M D T3050 L3052 L3053 D3076 A3077 F3084 Q3088 T49 L51 L52 D75 A76 F83 Q87
BS02 H4M D H3022 D3024 K3071 V3072 T3073 F3119 H21 D23 K70 V71 T72 F118
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0016840 carbon-nitrogen lyase activity
Biological Process
GO:0006730 one-carbon metabolic process
GO:0009636 response to toxic substance
GO:0016051 carbohydrate biosynthetic process
GO:0046294 formaldehyde catabolic process
Cellular Component
GO:0005737 cytoplasm

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External links
PDB RCSB:1y60, PDBe:1y60, PDBj:1y60
PDBsum1y60
PubMed15632161
UniProtQ9FA38|FAE_METEA 5,6,7,8-tetrahydromethanopterin hydro-lyase (Gene Name=fae)

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