Structure of PDB 1xm5 Chain D

Receptor sequence
>1xm5D (length=152) Species: 562 (Escherichia coli) [Search protein sequence]
MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIRVVDTAE
SHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQ
GKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY
IA
3D structure
PDB1xm5 The ybeY protein from Escherichia coli is a metalloprotein.
ChainD
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NI D H4114 H4118 H4124 H114 H118 H124
Gene Ontology
Molecular Function
GO:0004222 metalloendopeptidase activity
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016151 nickel cation binding
GO:0016892 RNA endonuclease activity, producing 3'-phosphomonoesters
GO:0046872 metal ion binding
Biological Process
GO:0006364 rRNA processing
GO:0006412 translation
GO:0009408 response to heat
GO:0030490 maturation of SSU-rRNA
GO:0031564 transcription antitermination
GO:0042254 ribosome biogenesis
GO:0042274 ribosomal small subunit biogenesis
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:1xm5, PDBe:1xm5, PDBj:1xm5
PDBsum1xm5
PubMed16511207
UniProtP0A898|YBEY_ECOLI Endoribonuclease YbeY (Gene Name=ybeY)

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