Structure of PDB 1vqm Chain D

Receptor sequence

>1vqmD (length=140) Species: 2238 (Haloarcula marismortui) [Search protein sequence]

FHEMREPRIEKVVVHMGIGHANAEDILGEITGQMPVRTKAKRTVGEFDIR
EGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFGLDVTVNL
VRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEV

3D structure

PDB

1vqm Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction.

Chain

Resolution

2.3 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	K20 H24 T52 R56 E60 K72 S96 Q97 F98 D99 D100 T101 S105 G107 D129	K11 H15 T38 R42 E46 K58 S82 Q83 F84 D85 D86 T87 S91 G93 D95
BS02	rna	D	E12 M13 R14 M48 V50 T74 R76 P137 G138 R140 K143 R144 D145 R149 P152 K154 H155	E3 M4 R5 M34 V36 T60 R62 P103 G104 R106 K109 R110 D111 R115 P118 K120 H121

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:1vqm, PDBe:1vqm, PDBj:1vqm
PDBsum	1vqm
PubMed	16285925
UniProt	P14124\|RL5_HALMA Large ribosomal subunit protein uL5 (Gene Name=rpl5)